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PhyMA is a laboratory under the dual supervision of the CNRS (INEE) and the National Museum of Natural History.
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Physiologie moléculaire et adaptation
UMR 7221

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Kerdivel Gwenneg, Blugeon Corinne, Fund Cédric, Rigolet Muriel, Sachs Laurent M. & Buisine Nicolas, 2019 — Opposite T3 Response of ACTG1-FOS Subnetwork Differentiate Tailfin Fate in Xenopus Tadpole and Post-hatching Axolotl. Front Endocrinol (Lausanne) vol. 10, , p. 194
ISSN
1664-2392
https://dx.doi.org/10.3389/fendo.2019.00194
Buisine Nicolas, Ruan Xiaoan, Ruan Yijun & Sachs Laurent M., August 2018 — Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues. Cold Spring Harb Protoc vol. 2018, n° 8, pdb.prot104620
ISSN
1559-6095
https://dx.doi.org/10.1101/pdb.prot104620
Buisine Nicolas, Ruan Xiaoan, Ruan Yijun & Sachs Laurent M., August 2018 — Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues. Cold Spring Harb Protoc vol. 2018, n° 8, pdb.prot097725
ISSN
1559-6095
https://dx.doi.org/10.1101/pdb.prot097725
Buisine Nicolas, Kerdivel Gwenneg & Sachs Laurent M., 2018 — De Novo Transcriptomic Approach to Study Thyroid Hormone Receptor Action in Non-mammalian Models. Methods Mol. Biol. vol. 1801, , p. 265-285
ISSN
1940-6029
https://dx.doi.org/10.1007/978-1-4939-7902-8_21
Schneider Katelin A., Shewade Leena H., Buisine Nicolas, Sachs Laurent M. & Buchholz Daniel R., 2018 — A novel stress hormone response gene in tadpoles of Xenopus tropicalis. Gen. Comp. Endocrinol. vol. 260, , p. 107-114
ISSN
1095-6840
https://dx.doi.org/10.1016/j.ygcen.2018.01.006
Olvera A., Martyniuk C. J., Buisine N., Jiménez-Jacinto V., Sanchez-Flores A., Sachs L. M. & Orozco A., November 2017 — Differential transcriptome regulation by 3,5-T2 and 3’,3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia. Sci Rep vol. 7, n° 1, p. 15043
ISSN
2045-2322
https://dx.doi.org/10.1038/s41598-017-14913-9
Buisine Nicolas, Ruan Xiaoan, Bilesimo Patrice, Grimaldi Alexis, Alfama Gladys, Ariyaratne Pramila, Mulawadi Fabianus, Chen Jieqi, Sung Wing-Kin, Liu Edison T., Demeneix Barbara A., Ruan Yijun & Sachs Laurent M., 2015 — Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis. PLoS ONE vol. 10, n° 9, e0137526
ISSN
1932-6203
https://dx.doi.org/10.1371/journal.pone.0137526
Bagamasbad Pia D., Bonett Ronald M., Sachs Laurent, Buisine Nicolas, Raj Samhitha, Knoedler Joseph R., Kyono Yasuhiro, Ruan Yijun, Ruan Xiaoan & Denver Robert J., June 2015 — Deciphering the regulatory logic of an ancient, ultraconserved nuclear receptor enhancer module. Mol. Endocrinol. vol. 29, n° 6, p. 856-872
ISSN
1944-9917
https://dx.doi.org/10.1210/me.2014-1349
Zambrano Alberto, García-Carpizo Verónica, Gallardo MaríaEsther, Villamuera Raquel, Gómez-Ferrería Maria Ana, Pascual Angel, Buisine Nicolas, Sachs Laurent M., Garesse Rafael & Aranda Ana, January 2014 — The thyroid hormone receptor β induces DNA damage and premature senescence. J. Cell Biol. vol. 204, n° 1, p. 129-146
ISSN
1540-8140
https://dx.doi.org/10.1083/jcb.201305084
Aldea Daniel, Hanna Patricia, Munoz David, Espinoza Javier, Torrejon Marcela, Sachs Laurent, Buisine Nicolas, Oulion Silvan, Escriva Hector & Marcellini Sylvain, September 2013 — Evolution of the vertebrate bone matrix: an expression analysis of the network forming collagen paralogues in amphibian osteoblasts. J. Exp. Zool. B Mol. Dev. Evol. vol. 320, n° 6, p. 375-384
ISSN
1552-5015
https://dx.doi.org/10.1002/jez.b.22511
Grimaldi Alexis G., Buisine Nicolas, Bilesimo Patrice & Sachs Laurent M., 2013 — High-throughput sequencing will metamorphose the analysis of thyroid hormone receptor function during amphibian development. Curr. Top. Dev. Biol. vol. 103, , p. 277-303
ISSN
1557-8933
https://dx.doi.org/10.1016/B978-0-12-385979-2.00010-1
Grimaldi Alexis, Buisine Nicolas, Miller Thomas, Shi Yun-Bo & Sachs Laurent M., July 2013 — Mechanisms of thyroid hormone receptor action during development: lessons from amphibian studies. Biochim. Biophys. Acta vol. 1830, n° 7, p. 3882-3892
ISSN
0006-3002
https://dx.doi.org/10.1016/j.bbagen.2012.04.020
Bilesimo Patrice, Jolivet Pascale, Alfama Gladys, Buisine Nicolas, Le Mevel Sebastien, Havis Emmanuelle, Demeneix Barbara A. & Sachs Laurent M., February 2011 — Specific histone lysine 4 methylation patterns define TR-binding capacity and differentiate direct T3 responses. Mol. Endocrinol. vol. 25, n° 2, p. 225-237
ISSN
1944-9917
https://dx.doi.org/10.1210/me.2010-0269
Espinoza Javier, Sanchez Mario, Sanchez Andrea, Hanna Patricia, Torrejon Marcela, Buisine Nicolas, Sachs Laurent & Marcellini Sylvain, December 2010 — Two families of Xenopus tropicalis skeletal genes display well-conserved expression patterns with mammals in spite of their highly divergent regulatory regions. Evol. Dev. vol. 12, n° 6, p. 541-551
ISSN
1525-142X
https://dx.doi.org/10.1111/j.1525-142X.2010.00440.x
Buisine Nicolas & Sachs Laurent, December 2009 — Impact of genome assembly status on ChIP-Seq and ChIP-PET data mapping. BMC Res Notes vol. 2, , p. 257
ISSN
1756-0500
https://dx.doi.org/10.1186/1756-0500-2-257
Kyono Yasuhiro, Raj Samhitha, Sifuentes Christopher J., Buisine Nicolas, Sachs Laurent & Denver Robert J., March 2020 — DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain. Methylation of cytosine residues in DNA influences chromatin structure and gene transcription, and its regulation is crucial… Dev. Biol. , ,
ISSN
1095-564X
https://dx.doi.org/10.1016/j.ydbio.2020.03.013
Nguyen Duy, Buisine Nicolas, Fayol Olivier, Michels Annemieke A., Bensaude Olivier, Price David H. & Uguen Patricia, August 2021 — An alternative D. melanogaster 7SK snRNP. BACKGROUND: The 7SK small nuclear RNA (snRNA) found in most metazoans is a key regulator of P-TEFb which in turn regulates RNA… BMC Mol Cell Biol vol. 22, n° 1, p. 43
ISSN
2661-8850
https://dx.doi.org/10.1186/s12860-021-00381-7
Thambirajah Anita A., Wade Michael G., Verreault Jonathan, Buisine Nicolas, Alves Verônica A., Langlois Valerie S. & Helbing Caren C., August 2021 — Disruption by stealth - Interference of endocrine disrupting chemicals on hormonal crosstalk with thyroid axis function in humans and other animals. Thyroid hormones (THs) are important regulators of growth, development, and homeostasis of all vertebrates. There are many… Environ Res vol. 203, , p. 111906
ISSN
1096-0953
https://dx.doi.org/10.1016/j.envres.2021.111906
Antoine-Lorquin Aymeric, Arensburger Peter, Arnaoty Ahmed, Asgari Sassan, Batailler Martine, Beauclair Linda, Belleannée Catherine, Buisine Nicolas, Coustham Vincent, Guyetant Serge, Helou Laura, Lecomte Thierry, Pitard Bruno, Stévant Isabelle & Bigot Yves, May 2021 — Two repeated motifs enriched within some enhancers and origins of replication are bound by SETMAR isoforms in human colon cells. Setmar is a gene specific to simian genomes. The function(s) of its isoforms are poorly understood and their existence in… Genomics vol. 113, n° 3, p. 1589-1604
ISSN
1089-8646
https://dx.doi.org/10.1016/j.ygeno.2021.03.032
Helou Laura, Beauclair Linda, Dardente Hugues, Arensburger Peter, Buisine Nicolas, Jaszczyszyn Yan, Guillou Florian, Lecomte Thierry, Kentsis Alex & Bigot Yves, April 2021 — The C-terminal Domain of piggyBac Transposase Is Not Required for DNA Transposition. PiggyBac(PB)-like elements (pble) are members of a eukaryotic DNA transposon family. This family is of interest to evolutionary… J Mol Biol vol. 433, n° 7, p. 166805
ISSN
1089-8638
https://dx.doi.org/10.1016/j.jmb.2020.166805
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